Publications:

1. Liu, Y., Rajput, R., Islam, M.T., Valle, I.D., Yao, T., Agrawal, R., Boone, B.A., Eckert, C.A., Abraham, P.E., and Chen, J. (2025). A split ribozyme system for in vivo plant RNA imaging and genetic engineering. Plant Biotechnology Journal 23, 1640–1649.

2. Boone, B.A., Ichino, L., Wang, S., Gardiner, J., Yun, J., Jami-Alahmadi, Y., Sha, J., Mendoza, C.P., Steelman, B.J., and van Aardenne, A. (2023). ACD15, ACD21, and SLN regulate the accumulation and mobility of MBD6 to silence genes and transposable elements. Science advances 9, eadi9036.

3. Johnstone, A.L., Boone, B.A., Cowles, M.W., Bone, J.R., Sun, Z.-W., and Keogh, M.-C. Acyl-Modified Histone Binding Assay.

4. Picard, C.L., Ichino, L., Buckley, T.J., Boone, B.A., Abuhanna, K.D., Zhang, Y., Behrendt, N.J., May Lei Soe, S., Luo, C., and Jacobsen, S.E. (2025). An antagonistic epigenetic mechanism regulating gene expression in pollen revealed through single-nucleus multiomics. bioRxiv, 2025–10.

5. Shah, R.N., Grzybowski, A.T., Cornett, E.M., Johnstone, A.L., Dickson, B.M., Boone, B.A., Cheek, M.A., Cowles, M.W., Maryanski, D., and Meiners, M.J. (2019). Are your ChIP antibodies skewing your data?

6. Boone, B.A. (2024). Chaperone Proteins: Bridging Protein Accumulation with Epigenetic Mechanisms and Gene Regulation in Arabidopsis thaliana.

7. Shah, R.N., Grzybowski, A.T., Cornett, E.M., Johnstone, A.L., Dickson, B.M., Boone, B.A., Cheek, M.A., Cowles, M.W., Maryanski, D., and Meiners, M.J. (2018). Examining the roles of H3K4 methylation states with systematically characterized antibodies. Molecular cell 72, 162–177.

8. Wang, S., Wang, M., Ichino, L., Boone, B.A., Zhong, Z., Papareddy, R.K., Lin, E.K., Yun, J., Feng, S., and Jacobsen, S.E. (2024). MBD2 couples DNA methylation to transposable element silencing during male gametogenesis. Nature Plants 10, 13–24.

9. Ichino, L., Boone, B.A., Strauskulage, L., Harris, C.J., Kaur, G., Gladstone, M.A., Tan, M., Feng, S., Jami-Alahmadi, Y., and Duttke, S.H. (2021). MBD5 and MBD6 couple DNA methylation to gene silencing through the J-domain protein SILENZIO. Science 372, 1434–1439.

10. Rajput, R., Boone, B.A., Mandlik, R., Islam, M.T., Qi, Y., Wang, J., Barrangou, R., Sozzani, R., Eckert, C.A., and Tuskan, G.A. (2025). Multigene engineering in plants: Technologies, applications, and future prospects. Biotechnology Advances, 108697.

11. Marunde, M.R., Popova, I.K., Hall, N.W., Vaidya, A., Bone, J.R., Boone, B.A., Brown, P.J., Ezell, R.J., Firestone, T.M., and Fuchs, H.A. (2025). Nucleosome context regulates chromatin reader preference. bioRxiv, 2025–04.

12. Whelihan, M.F., Cowles, M.W., Boone, B.A., Sun, Z.-W., Bone, J.R., and Keogh, M.-C. Nucleosome Remodeling Assay by EpiDyne^TM-FRET.

13. Liu, Y., Rajput, R., Islam, T., Del Valle, I., Yao, T., Agarwal, R., Boone, B.A., Eckert, C., Abraham, P.E., and Chen, J.-G. (2024). Ribozyme-based biosensor for imaging gene expression in plants. bioRxiv, 2024–09.

14. Attar, N., Campos, O.A., Vogelauer, M., Cheng, C., Xue, Y., Schmollinger, S., Salwinski, L., Mallipeddi, N.V., Boone, B.A., and Yen, L. (2020). The histone H3-H4 tetramer is a copper reductase enzyme. Science 369, 59–64.

15. Boone, B.A., Mendoza, C.P., Behrendt, N.J., and Jacobsen, S.E. (2024). α-Crystalline Domains and Intrinsically Disordered Regions Can Work in Parallel to Induce Accumulation of MBD6 at Chromocenters in Arabidopsis thaliana. Epigenomes 8, 33.